Publications:
(#co-first
author; *corresponding author)
1.
Liu, P.-Y., Yang, S.-H.,
Yang, S-Y. (2021) KTU: K-mer Taxonomic Units improve the biological
relevance of amplicon sequence variant microbiota data. Methods in Ecology and
Evolution. 00:1-9. DOI: 10.1111/2041-210X.13758
2.
Yang,
S.-H., Chen, C., Hsieh, Y. E., Yang,
S.-Y., Li, H.-W., Ching,
T.-Y., Wang, C.-H., Chang, C.-F., Tang,
S.-L., and Wu, G.-C. (2021) Bacterial dynamics in the accessory nidamental
gland of Sepioteuthis lessoniana throughout maturation. Microbes and
Environments. 36(4). Doi:10.1264/jsme2.ME21030
3.
Yang, S.-Y., Lu, C.-Y., Tang, S.-L., Das, R. R., Sakai, K., Yamashiro, H.
and Yang, S. H. (2020) Effects of ocean acidification on coral endolithic microbial
community in Isopora
palifera and Porites lobata. Frontiers in Marine Science. doi:http://dx.doi.org/10.3389/fmars.2020.603293
4.
Kuo, C. Y.,
Keshavmurthy, S., Chung, A., Huang, Y. Y., Yang, S.-Y., Chen, Y. C., and
Chen, C. A. (2020) Demographic census confirms a stable population of the
critically-endangered caryophyllid coral Polycyathus chaishanensis
(Scleractinia; Caryophyllidae) in the Datan Algal Reef, Taiwan. Scientific
Reports, 10(1), 1-10.
5.
Kuo, C.Y., Chung, A.,
Keshavmurthy, S., Huang, Y.-Y., Yang, S.-Y., Chen, C. A. (2019) Lonely
giant on the sand: unexpected massive Taiwanese coral, Polycyathus
chaishanensis in the Datan algal reef demands a conservation focus. Galaxea,
Journal of Coral Reef Studies, 21(1): 11-12.
6.
Keshavmurthy, S., Yang,
S.-Y., Su, C.-Y., Chiu, Y. W., Chen, C. A. (2019). Association between
massive Porites and the hidden hermit crab, Calcinus latens (Decapoda, Diogenidae). Bulletin of Marine Science, 95(1), 115-116.
7.
Neo,
M.L., Lim, K.K., Yang, S.-Y., Soong, G.Y., Masucci, G.D., Biondi, P., Wee, H.B., Kise, H.,
Reimer, J.D. (2019) Status of giant clam resources around Okinawa‐jima Island,
Ryukyu Archipelago, Japan. Aquatic Conservation: Marine and Freshwater Ecosystems,
29(6): 1002-11.
8.
Yang, S.-Y., Chen, H.-J., Ho, M.-J., Chen, Y.-J., Huang, Y.-Y., Tang,
S.-L., Jeng, M.-S., Chen, C. A. (2018) Outbreak of coral-killing
cyanobateriasponge, Terpios
hoshinota, in Taiping Island (Itu
Aba), Spratlys, South China Sea. Bulletin of Marine Sciences, 94(4):1543-1544.
9.
Yang, S.-Y., Fong, W.-L., Chow, W.S., Hsu, C.-M., Chan, C.C.-L.,
Keshavmurthy S., Chen, C.A. (2018) Development of Novel Polymorphic
Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation Sequencing.
Zoological Studies, 57(32).
10.
Soliman, T., Yang,
S.-Y., Yamazaki, T., Jenke-Kodama, H. (2017). Profiling soil microbial
communities with next-generation sequencing: the influence of DNA kit selection
and technician technical expertise. PeerJ, 5: e4178.
11.
Soliman,
T., Reimer, J. D., Yang, S.-Y., Villar-Briones, A., C Roy, M., Jenke-Kodama, H. (2017).
Diversity of microbial communities and quantitative chemodiversity in layers of
marine sediment cores from an causeway (Kaichu-Doro) in Okinawa Island, Japan.
Frontiers in microbiology, 8: 2451.
12. Liou, C., *Yang, S.-Y., *Chen, C. A. (2017) Unprecedented
calcareous algal reefs in northern Taiwan merit a high conservation priority.
Coral Reefs, 36: 1253.
13.
Noda, H., Parkinson,
J.E., Yang, S.-Y., Reimer, J.D.
(2017) A preliminary survey of zoantharian endosymbionts shows high
genetic variation over small geographic scales on Okinawa-jima Island, Japan.
PeerJ, 5: e3740.
14.
Parkinson, J.E., Yang,
S.-Y., Kawamura, I., Byron, G., Todd, P.A., Reimer, J.D. (2016) A citizen
science approach to monitoring bleaching in the zoantharian Palythoa
tuberculosa. PeerJ, 4, e1815.
15.
Reimer,
J.D., Yang, S.-Y., White, K.N., Asami R., Fujita K., Hongo C.,
Ito S., Kawamura I.,
Maeda B., Mizuyama M., Obuchi M., Sakamaki T., Tachihara K., Tamura
M., Tanahara A., Yamaguchi A., Jenke-Kodama H. (2015) Effects of causeway
construction on environment and biota of subtropical tidal flats in Okinawa,
Japan. Marine Pollution Bulletin, 94: 153-167.
16.
Yang, S.-Y., Reimer, J.D., Low, M.E. (2014) Die
Pflanzenthiere in Abbildungen nach der Natur and its Fortsetzungen by Eugenius
Johann Christoph Esper: Overlooked Sources for its Dates of Publication and
Location of Type Material. Sherbornia, 1(2): 5-7.
17.
Keshavmurthy, S., Meng,
P.J., Wang, J.T., Kuo, C.Y., Yang, S.-Y., Hsu, C.M., Gan, C.H., Dai,
C.F., Chen, C.A. (2014) Can resistant coral-Symbiodinium associations
enable coral communities to survive climate change? A study of a site exposed
to long-term hot water input. PeerJ, 2: e327.
18.
Reimer, J.D., Albinsky,
D., Yang, S.-Y., Lorion, J. (2014) Zoanthid (Cnidaria: Anthozoa:
Hexacorallia: Zoantharia) species of coral reefs in Palau. Marine Biodiversity, 44(1): 37-44.
19.
Hibino,
Y., Todd, P., Yang, S.-Y., Benayahu, Y., Reimer, J.D. (2014) Molecular and morphological
evidence for conspecificity of two common Indo-Pacific species of Palythoa
(Cnidaria: Anthozoa). Hydrobiologia, 733(1): 31-43.
20.
Reimer, J.D., Irei, Y.,
Fujii, T., Yang, S.-Y. (2013) Phylogenetic analyses of shallow water
zoanthids (Cnidaria: Hexacorallia) and their Symbiodinium spp. from
Taiwan. Zoological Studies, 52(38): 1-16.
21.
*Yang, S.-Y., Bourgeois, C., Ashworth, C.D., Reimer,
J.D. (2013) Palythoa zoanthid 'barrens’ in
Okinawa: examination of possible environmental causes. Zoological Studies,
52(1): 39.
22.
#Keshavmurthy,
S., #Yang,
S.-Y., #Alamaru, A., Chuang, Y.-Y., Pichon, M.,
Obura, D., Fontana, S., De Palmas, S., Stefani, F., Benzoni. F., MacDonald, A.,
Noreen, A. M. E., Chen, C., Wallace, C. C., Pillay, R. M., Denis, V., Amri, A.
Y., Reimer, J. D., Mezaki, T., Sheppard, C., Loya, Y., Abelson, A., Mohammed,
M. S., Baker, A. C., Mostafavi, P. G., Suharsono, B. A., & Chen, C. A.
(2013) DNA barcoding reveals the coral “laboratory-rat”, Stylophora
pistillata encompasses multiple
identities. Scientific Reports, 3: 1520.
23.
Sheppard,
C. R. C., Ateweberhan, M., Chen, C. A., Harris, A., Jones, R., Keshavmurthy,
S., Lundin, C., Obura, D., Purkis, S., Raines, P., Riegl, B., Schleyer, M.,
Sheppard, A. L. S., Tamelander, J., Turner, J. R., Visram, S., and Yang, S.-Y. (2013) Coral Reefs of
the Chagos Archipelago, Indian Ocean. C.R.C. Sheppard (ed.), Coral Reefs of the
United Kingdom Overseas Territories, Coral Reefs of the World 4.
24.
#Yang, S.-Y., #Keshavmurthy,
S., Obura, D., Sheppard, C. R. C., Visram, S. and Chen, C. A. (2012) Diversity
and distribution of Symbiodinium associated with seven common coral
species in the Chagos Archipelago, central Indian Ocean. PLoS ONE, 7:
e35836.
25. Sheppard,
C. R. C., Ateweberhan, M., Bowen, B. W., Carr, P., Chen, C. A., Clubbe, C.,
Craig, M. T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M. R., Gan,
C.-H., Gollock, M., Guzman, N., Graham, N. A. J., Harris, A., Jones, R.,
Keshavmurthy, S., Koldewey, H., Lundin, C. G., Mortimer, J. A., Obura, D.,
Pfeiffer, M., Price, A. R. G., Purkis, S., Raines, P., Readman, J. W., Riegl,
B., Rogers, A., Schleyer, M., Seaward, M. R. D., Sheppard, A. L. S.,
Tamelander, J., Turner, J. R., Visram, S., Vogler, C., Vogt, S., Wolschke, H.,
Yang, J. M.-C., Yang, S.-Y. and Yesson, C. (2012) Reefs and islands of
the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take
marine protected area. Aquatic Conserv: Mar. Freshw. Ecosyst., 22: 232-261.
26.
Stefani, F.,
Benzoni, F., Yang, S.-Y.,
Pichon, M., Galli, P. and Chen, C. A. (2011) Comparison of morphological and
genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora
(Cnidaria, Scleractinia). Coral Reefs, 30: 1033-1049.
Research
directions:
Coral
reef benthic biodiversity and microbial ecology
The
effects of climate change on coral reef ecosystem
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